PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 175aa    MW: 20130.4 Da    PI: 9.4733
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702106.64.2e-3391123121
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 
                     s +++CqdCGnqakkdC++ RCRtCC+srgf+C+th+kstW p++ rr r++ ++++s+ +++ +   + +kr r                ++++
  XP_016500080.1   9 SSSSRCQDCGNQAKKDCTYLRCRTCCRSRGFHCQTHIKSTWAPVSTRRPRHHLHQQLSTIQQQLQaVPNPNKRYR----------------ENHE 87 
                     56789********************************************97766665433322110122222222................2223 PP

          DUF702  97 kkeletsslPeevsseavfrcvrvs 121
                      +  e  ++P evs +avfrc+r+ 
  XP_016500080.1  88 IQGEEEGDFPGEVSFPAVFRCIRLV 112
                     34556678***************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-3511112IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.7E-251455IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MMKEVEGSSS SSRCQDCGNQ AKKDCTYLRC RTCCRSRGFH CQTHIKSTWA PVSTRRPRHH  60
LHQQLSTIQQ QLQAVPNPNK RYRENHEIQG EEEGDFPGEV SFPAVFRCIR LVKAAPFSSS  120
NLLIYLLLQP LVLLKHLLIP ILLVLSFLAT TTWAQIKRIS TCTEFMHLSS FMDKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500080.11e-129PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2
SwissprotQ9SD403e-31SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLK4B3M74e-48K4B3M7_SOLLC; Uncharacterized protein
STRINGSolyc01g110140.2.11e-47(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-27Lateral root primordium (LRP) protein-related